| Protein ZmOrphan300 | |
|---|---|
|
ZmOrphan300 is a protein in the Orphans family.
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| Information | |
| Orphans Name: | ZmOrphan300 |
| Species: | Maize |
| Orphans Family: | Orphans |
| Gene Name(Synonym): | |
| Uniprot ID: | A0A1D6PDQ1 |
Protein ZmOrphan300
ZmOrphan300 is a protein in the Orphans family. NOTE the "Uniprot ID" shown on the right is a placeholder for testing. The interactive structure shown is based on that id.
| Overview of domains present in v5 transcripts | |
|---|---|
| PF06203 | |
| Zm00001eb156050_T001 |  |
Protein-DNA Interactions
Meme Logos for Maize v4 Gene IDs
| Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
|---|---|---|---|---|---|
| Zm00001d043783 | DAPseq |  |
sequence | fimo | position |
| Zm00001d043783 | DAPseq |  |
sequence | fimo | position |
| Zm00001d043783 | ChIPseq |  |
sequence | fimo | position |
| Zm00001d043783 | PChIPseq |  |
sequence | fimo | position |
Interactions where ZmOrphan300 is the regulator
Interactions where ZmOrphan300 is the target
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Zm00001eb156050_T001 from maize genome v5
Amino Acid Sequence
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MYQYHHQPGTSSCYGEVTGGGGDAILPSPARPDAMLADGGAAFLQSPLPLPPSSYMLPPHCPSPLLVPPPPVPMSMWQSD
EQQITRVAAPVRYSAEERRERIDKYRSKRNQRNFQKKITYACRKTLADSRPRVKGRFARNAGDYTDADAAVDHVGQPAEI
EVPSPASPEWWPPAVQLQDLPAGIDPADEEMLAAYLGVSSITIDDHQYSCQP
MYQYHHQPGTSSCYGEVTGGGGDAILPSPARPDAMLADGGAAFLQSPLPLPPSSYMLPPHCPSPLLVPPPPVPMSMWQSD
EQQITRVAAPVRYSAEERRERIDKYRSKRNQRNFQKKITYACRKTLADSRPRVKGRFARNAGDYTDADAAVDHVGQPAEI
EVPSPASPEWWPPAVQLQDLPAGIDPADEEMLAAYLGVSSITIDDHQYSCQP
MYQYHHQPGTSSCYGEVTGGGGDAILPSPARPDAMLADGGAAFLQSPLPLPPSSYMLPPHCPSPLLVPPPPVPMSMWQSD
EQQITRVAAPVRYSAEERRERIDKYRSKRNQRNFQKKITYACRKTLADSRPRVKGRFARNAGDYTDADAAVDHVGQPAEI
EVPSPASPEWWPPAVQLQDLPAGIDPADEEMLAAYLGVSSITIDDHQYSCQP
MYQYHHQPGTSSCYGEVTGGGGDAILPSPARPDAMLADGGAAFLQSPLPLPPSSYMLPPHCPSPLLVPPPPVPMSMWQSD
EQQITRVAAPVRYSAEERRERIDKYRSKRNQRNFQKKITYACRKTLADSRPRVKGRFARNAGDYTDADAAVDHVGQPAEI
EVPSPASPEWWPPAVQLQDLPAGIDPADEEMLAAYLGVSSITIDDHQYSCQP
MYQYHHQPGTSSCYGEVTGGGGDAILPSPARPDAMLADGGAAFLQSPLPLPPSSYMLPPHCPSPLLVPPPPVPMSMWQSD
EQQITRVAAPVRYSAEERRERIDKYRSKRNQRNFQKKITYACRKTLADSRPRVKGRFARNAGDYTDADAAVDHVGQPAEI
EVPSPASPEWWPPAVQLQDLPAGIDPADEEMLAAYLGVSSITIDDHQYSCQP
| Secondary Structure Color Code | |
|---|---|
| BEND | region with high backbone curvature without specific hydrogen bonding |
| HELX_LH_PP_P | left-handed polyproline helix |
| HELX_RH_3T_P | right-handed 3-10 helix |
| HELX_RH_AL_P | right-handed alpha helix |
| HELX_RH_PI_P | right-handed pi helix |
| STRN | beta strand |
| TURN_TY1_P | type I turn |
| UNDETERMINED | no data available |
| Domains Present | |
|---|---|
| PF06203 |
|
| Hover here to show all domains | |
Nucleotide Sequence
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GTACTCACTACACACTACTACATAC...
GTACTCACTACACACTACTACATACGTCTAGCAGCTGCGAGCATGTATCAGTATCACCATCAGCCGGGCACCTCTTCTTGTTATGGTGAGGTTACAGGCGGTGGTGGCGATGCCATCCTTCCTTCTCCAGCTCGACCGGACGCCATGCTTGCCGACGGAGGAGCAGCATTCTTGCAATCGCCATTGCCATTGCCGCCGTCGAGCTACATGCTACCACCACACTGCCCCTCTCCTCTGCTTGTTCCTCCACCTCCAGTACCCATGTCCATGTGGCAGTCGGACGAGCAGCAAATTACCAGGGTGGCGGCGCCAGTAAGGTACAGCGCGGAGGAGCGGCGGGAGCGCATCGACAAGTACAGGAGCAAGCGCAACCAGCGCAACTTCCAAAAGAAGATCACGTATGCTTGCAGGAAGACGCTCGCCGACAGTCGGCCCAGGGTGAAGGGCCGCTTCGCTCGCAACGCCGGCGACTACACCGATGCAGATGCTGCAGTCGACCATGTCGGCCAACCAGCTGAAATCGAGGTGCCATCACCAGCCTCGCCCGAGTGGTGGCCGCCAGCAGTTCAGCTTCAAGACTTGCCTGCCGGCATCGACCCAGCAGACGAAGAGATGCTGGCCGCCTACCTTGGCGTCTCCTCCATCACTATAGATGATCACCAGTATAGCTGCCAGCCGTAGACACATAAAAGATAGATAGATGATGCACGATAAGTCATTCCATACTCCATAGTGAGTGATCATCACCTTCTCTTTCTCTCTCTATATTAGTATTATTTGTCACCTAGGAT
AC233946.1_FGT004 from maize genome v3
Amino Acid Sequence
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MYQYHHQPGTSSCYGEVTGGGGDAILPSPARPDAMLADGGAAFLQSPLPLPPSSYMLPPHCPSPLLVPPPPVPMSMWQSD
EQQITRVAAPVRYSAEERRERIDKYRSKRNQRNFQKKITYACRKTLADSRPRVKGRFARNAGDYTDADAAVDHVGQPAEI
EVPSPASPEWWPPAVQLQDLPAGIDPADEEMLAAYLGVSSITIDDHQYSCQP
Nucleotide Sequence
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ATGTATCAGTATCACCATCAGCCGG...
ATGTATCAGTATCACCATCAGCCGGGCACCTCTTCTTGTTATGGTGAGGTTACAGGCGGTGGTGGCGATGCCATCCTTCCTTCTCCAGCTCGACCGGACGCCATGCTTGCCGACGGAGGAGCAGCATTCTTGCAATCGCCATTGCCATTGCCGCCGTCGAGCTACATGCTACCACCACACTGCCCCTCTCCTCTGCTTGTTCCTCCACCTCCAGTACCCATGTCCATGTGGCAGTCGGACGAGCAGCAAATTACCAGGGTGGCGGCGCCAGTAAGGTACAGCGCGGAGGAGCGGCGGGAGCGCATCGACAAGTACAGGAGCAAGCGCAACCAGCGCAACTTCCAAAAGAAGATCACGTATGCTTGCAGGAAGACGCTCGCCGACAGTCGGCCCAGGGTGAAGGGCCGCTTCGCTCGCAACGCCGGCGACTACACCGATGCAGATGCTGCAGTCGACCATGTCGGCCAACCAGCTGAAATCGAGGTGCCATCACCAGCCTCGCCCGAGTGGTGGCCGCCAGCAGTTCAGCTTCAAGACTTGCCTGCCGGCATCGACCCAGCAGACGAAGAGATGCTGGCCGCCTACCTTGGCGTCTCCTCCATCACTATAGATGATCACCAGTATAGCTGCCAGCCGTAG
Zm00001d043783_T001 from maize genome v4
Amino Acid Sequence
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MYQYHHQPGTSSCYGEVTGGGGDAILPSPARPDAMLADGGAAFLQSPLPLPPSSYMLPPHCPSPLLVPPPPVPMSMWQSD
EQQITRVAAPVRYSAEERRERIDKYRSKRNQRNFQKKITYACRKTLADSRPRVKGRFARNAGDYTDADAAVDHVGQPAEI
EVPSPASPEWWPPAVQLQDLPAGIDPADEEMLAAYLGVSSITIDDHQYSCQP
Nucleotide Sequence
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CTCACTACACACTACTACATACGTC...
CTCACTACACACTACTACATACGTCTAGCAGCTGCGAGCATGTATCAGTATCACCATCAGCCGGGCACCTCTTCTTGTTATGGTGAGGTTACAGGCGGTGGTGGCGATGCCATCCTTCCTTCTCCAGCTCGACCGGACGCCATGCTTGCCGACGGAGGAGCAGCATTCTTGCAATCGCCATTGCCATTGCCGCCGTCGAGCTACATGCTACCACCACACTGCCCCTCTCCTCTGCTTGTTCCTCCACCTCCAGTACCCATGTCCATGTGGCAGTCGGACGAGCAGCAAATTACCAGGGTGGCGGCGCCAGTAAGGTACAGCGCGGAGGAGCGGCGGGAGCGCATCGACAAGTACAGGAGCAAGCGCAACCAGCGCAACTTCCAAAAGAAGATCACGTATGCTTGCAGGAAGACGCTCGCCGACAGTCGGCCCAGGGTGAAGGGCCGCTTCGCTCGCAACGCCGGCGACTACACCGATGCAGATGCTGCAGTCGACCATGTCGGCCAACCAGCTGAAATCGAGGTGCCATCACCAGCCTCGCCCGAGTGGTGGCCGCCAGCAGTTCAGCTTCAAGACTTGCCTGCCGGCATCGACCCAGCAGACGAAGAGATGCTGGCCGCCTACCTTGGCGTCTCCTCCATCACTATAGATGATCACCAGTATAGCTGCCAGCCGTAGACACATAAAAGATAGATAGATGATGCACGATAAGTCATTCCATACTCCATAGTGAGTGATCATCACCTTCTCTTTCTCTCTCTATATTAGTATTATTTGTCACCTAGGATGATAAATTAATGGTCCATTGTTTGGACTCGACTGAATACATTAGATCAAATCAGTTTGTGCTTAGACGAGCACGTCCTAGACCTGACAAAAACGGGTCTGATATACTTTTGCGACACCCAACCCGTTATAAAATGTCTTAGCTATGAACACT
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